PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496179.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 521aa    MW: 60665.5 Da    PI: 6.6452
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496179.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.61.4e-27120205187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l L+e+r+++++++++++ k+plW e+s+ m +e g++rs k+Ckek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  XP_004496179.1 120 RWPRQETLSLLEIRSRLHSKFKDNNHKAPLWNEISRIMaEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASR--QDGKHYRFFRQLEA 205
                     8*************************************7778*****************************8..55667*******85 PP

2trihelix43.21e-13435501166
        trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                     rWt+ e+  Li++r++ e+r+r+ g l+++ W e+++km   gf r+ ++Ck+ w ++++  +++ +
  XP_004496179.1 435 RWTEMEISSLIQLRTSFEQRVREnGDLDEGVWNEIGEKMVYMGFDRNGIECKKIWHEISMSLRRTVD 501
                     8*********************8579**********************************9999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.76119178IPR017877Myb-like domain
PfamPF138373.2E-19119206No hitNo description
CDDcd122032.69E-20119185No hitNo description
PfamPF138377.0E-8434501No hitNo description
PROSITE profilePS500906.377435493IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MNDPYAFPED LRRLISSRNH LTTTTQQPPS LYASSSSSSF PSPFNNNSYD PIMQIGDVFY  60
PRPAFTHHYD YYSSSSNTLI NPIPIPIPTT TPSSAFAALQ TNSSHNNKTN WLAFDPSNNR  120
WPRQETLSLL EIRSRLHSKF KDNNHKAPLW NEISRIMAEE FGYQRSGKKC KEKFENLYKY  180
YKKTKEGKAS RQDGKHYRFF RQLEAICGES NTTHHHASTS DNTTLHHAAN AAVDSHQTPS  240
FTTNQENVIN IGDHQNLNNN FKYSESLTSF SNSSEFEITS SCENNDDEDL SAVAHMMKQP  300
KEKGLVEDQR QSDDKRVRKS WRVKVEEIVD YHMRNIIETQ DTWMEKMLSV VEQREQEMAL  360
KEEERKRKES MRCDKEIHEL WAKEKAWVEA RDAALLEVVR KHIGIENKEA LVSNKNKSQV  420
NDTKYGYPFE NVDQRWTEME ISSLIQLRTS FEQRVRENGD LDEGVWNEIG EKMVYMGFDR  480
NGIECKKIWH EISMSLRRTV DCGVKTRPWC LGLKVTDDDE I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941223e-87BT094122.1 Soybean clone JCVI-FLGm-18O17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496179.10.0PREDICTED: trihelix transcription factor PTL-like
TrEMBLA0A072VNQ70.0A0A072VNQ7_MEDTR; Trihelix transcription factor
STRINGGLYMA20G32940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.14e-77Trihelix family protein